Portfolio item number 1
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Posts by Collection
portfolio
Portfolio item number 2
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publications
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Published in Nature, 2020
A draft human pangenome reference
Published in Nature, 2023
Pangenome graph construction from genome alignments with Minigraph-Cactus
Published in Nature Biotechnology, 2023
Personalized pangenome references
Published in Nature Methods, 2024
Complete sequencing of ape genomes
Published in Nature, 2025
Adaptive radiation and social evolution of the ants
Published in Cell, 2025
talks
Variant representation on graphs (with Heng Li)
Published:
Explain how genetic variants are currently represented in pangenome graphs, and discuss ideas for future improvements. The meeting agenda is here and the session agenda here.
Better graph variants using this one weird trick
Published:
Detail graph construction improvements and how they can lead to state of the art variant calls using data from the second HPRC data release.
Applying Pangenome Coordinates
Published:
Applications of pangenome graph coordinates to genotyping, centromeres and comparative pangenomics.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.